Nirfast is an FEM based package for modeling Near-Infrared light transport in tissue. This includes:
Nirfast v8 [Updates]
Nirview v1.12 - segmentation and visualization
If you use Nirfast for a publication, please reference:
- M. Jermyn, H. Ghadyani, M.A. Mastanduno, W. Turner, S.C. Davis, H. Dehghani, and B.W. Pogue, "Fast segmentation and high-quality three-dimensional volume mesh creation from medical images for diffuse optical tomography," J. Biomed. Opt. 18 (8), 086007 (August 12, 2013), doi: 10.1117/1.JBO.18.8.086007 [link].
- H. Dehghani, M.E. Eames, P.K. Yalavarthy, S.C. Davis, S. Srinivasan, C.M. Carpenter, B.W. Pogue, and K.D. Paulsen, “Near infrared optical tomography using NIRFAST: Algorithm for numerical model and image reconstruction,” Communications in Numerical Methods in Engineering, vol. 25, 711-732 (2009) [link].