Dunlap, Jay C. 1999. Molecular Bases of Circadian Oscillators. Cell 96:271-290.
Liu Y, Loros JJ, and Dunlap JC. 2000. Phosphorylation of the Neurospora clock protein FREQUENCY determines its turnover rate and sets the period of the circadian clock, Proc Nat Acad Sci USA. 97:234-239.
Yagita K, Yamaguchi S, Gijsbertus S, van der Horst TJ, Hoeijmakers JH, Yasui A, Loros JJ, Dunlap JC, and Okamura H. 2000. Dimerization and nuclear entry of mPER proteins in mammalian cells, Genes & Development, 14:1353-1363.
Lee K, Loros JJ, and Dunlap JC. 2000. Interconnected feedback loops in the Neurospora circadian system, Science. 289: 107-110.
Collett MA, Dunlap JC, and Loros JJ. 2000. Partially functional WHITE COLLAR-2 gives reduced levels of frequency transcript and protein, lengthened period and altered temperature compensation of the Neurospora circadian clock. Molec Cell Biol. 21:2619-2628.
Iwasaki, H. and Dunlap, J.C. 2000. Microbial Circadian Oscillatory Systems in Neurospora and Synechococcus: Models for Cellular Clocks. Curr Opin Micro 3:189-196.
Loros, J.J. and Dunlap, J.C. 2001. Genetics and Molecular Genetics of the Neurospora Circadian System. Ann Rev Physiol 63:757-794.
Denault DL, Loros JJ, and Dunlap JC. 2001. WC-2 mediates WC-1-FRQ interaction within the PAS protein-linked circadian feedback loop of Neurospora, The EMBO Journal, 20:109-117.
Heintzen C, Loros JJ, and Dunlap JC. 2001. The PAS protein VIVID defines a clock-associated feedback loop that represses light input, modulates gating, and regulates clock resetting, Cell, 104:453-464.
Zhu J, Nowrousian M, Kupfer D, Colot HV, Berrocal-Tito G, Lai H, Bell-Pedersen D, Roe BA, Loros JJ, and Dunlap JC. 2001. Analysis of expressed sequence tags from two starvation, time-of-day-specific libraries of Neurospora crassa reveals novel clock-controlled genes. Genetics, 157: 1057-1065.
Collett MA, Dunlap JC, and Loros JJ. 2001. Circadian clock-specific roles for the light response protein WHITE COLLAR-2. Molecular and Cellular Biology, 2619-2628.
Bell-Pedersen D, Lewis ZA, Loros JJ, and Dunlap JC. 2001. The Neurospora circadian clock regulates a transcription factor that controls rhythmic expression of the output eas(ccg-2) gene. Molecular Microbiology. 41(4):897-909.
Collett MA, Garceau N, Dunlap JC, and Loros JJ. 2001. Light and clock expression of the neurspora clock gene frequency is differentially driven by but dependent on WHITE COLLAR-2. Genetics. 160:149-158.
Shinohara ML, Correa A, Bell-Pedersen D, Dunlap JC, and Loros JJ. 2002. Neurospora clock-controlled Gene 9 (ccg-9) encodes trehalose synthase: circadian regulation of stress responses and development. Eukaryotic Cell. Feb. 33-43.
Collett MA, Garceau N, Dunlap JC, and Loros JJ. 2002. Light and Clock Expression of the Neurospora Clock Gene frequency Is Differentially Driven by but Dependent on WHITE COLLAR-2. Genetics. 160(1):149-158.
Shinohara ML, Correa A, Bell-Pedersen D, Dunlap JC, and Loros JJ. 2002. Neurospora clock-controlled gene-9 (ccg-9) encodes trehalose synthase: Circadian regulation of stress responses and development Eukaryotic Cell. 1(1):33-43. [PDF]
Duffield GE, Best JD, Meurers BH, Bittner A, Loros JJ, and Dunlap JC. 2002. Circadian programs of transcriptional activation, signaling, and protein turnover revealed by microarray analysis of mammalian cells. Curr Biol. 12(7):551-557. [PDF]
Froehlich AC, Liu Y, Loros JJ, and Dunlap JC. 2002. White Collar-1, a circadian blue light photoreceptor, binding to the frequency promoter. Science. 297(5582):815-819. (cover article) Epub 2003 Apr 24. [PDF]
Lee K, Dunlap JC, and Loros JJ. 2003. Roles for WHITE COLLAR-1 in Circadian and General Photoperception in Neurospora crassa. Genetics. 163(1):103-14. [PDF]
Kramer C, Loros JJ, Dunlap JC, Crosthwaite SK. 2003. Role for antisense RNA in regulating circadian clock function in Neurospora crassa. Nature. 421(6926):948-52. [PDF]
Nowrousian M, Duffield, G, Loros JJ, and Dunlap JC. 2003. Microarray analysis of circadian clock-regulated gene expression in Neurospora crassa. Genetics. 164(3):923-33. [PDF]
Froehlich AC, Pregueiro A, Lee K, Denault D, Colot H, Nowrousian M, Loros JJ, and Dunlap JC. 2003.The molecular workings of the Neurospora biological clock. Novartis Found Symp. 253:184-98; discussion 102-9, 198-202, 281-4. Review.
Froehlich AC, Loros JJ, and Dunlap JC. 2003. Rhythmic Binding of a WHITE COLLAR Containing Complex to the frequency Promoter is Inhibited by FREQUENCY. Proc Nat Acad Sci. USA 100:5914-5919. [PDF]
Galagan JE, Calvo SE, Borkovich KA, Selker EU, Read ND, Jaffe D, FitzHugh W, Ma LJ, Smirnov S, Purcell S, Rehman B, Elkins T, Engels R, Wang S, Nielsen CB, Butler J, Endrizzi M, Qui D, Ianakiev P, Bell-Pedersen D, Nelson MA, Werner-Washburne M, Selitrennikoff CP, Kinsey JA, Braun EL, Zelter A, Schulte U, Kothe GO, Jedd G, Mewes W, Staben C, Marcotte E, Greenberg D, Roy A, Foley K, Naylor J, Stange-Thomann N, Barrett R, Gnerre S, Kamal M, Kamvysselis M, Mauceli E, Bielke C, Rudd S, Frishman D, Krystofova S, Rasmussen C, Metzenberg RL, Perkins DD, Kroken S, Cogoni C, Macino G, Catcheside D, Li W, Pratt RJ, Osmani SA, DeSouza CP, Glass L, Orbach MJ, Berglund JA, Voelker R, Yarden O, Plamann M, Seiler S, Dunlap J, Radford A, Aramayo R, Natvig DO, Alex LA, Mannhaupt G, Ebbole DJ, Freitag M, Paulsen I, Sachs MS, Lander ES, Nusbaum C, Birren B. 2003.The genome sequence of the filamentous fungus Neurospora crassa. Nature 422:859-868. [PDF]
Borkovich KA, Alex LA, Yarden O, Freitag M, Turner GE, Read ND, Seiler S, Bell-Pedersen D, Paietta J, Plesofsky N, Plamann M, Goodrich-Tanrikulu M, Schulte U, Mannhaupt G, Nargang FE, Radford A, Selitrennikoff C, Galagan JE, Dunlap JC, Loros JJ, Catcheside D, Inoue H, Aramayo R, Polymenis M, Selker EU, Sachs MS, Marzluf GA, Paulsen I, Davis R, Ebbole DJ, Zelter A, Kalkman ER, O'Rourke R, Bowring F, Yeadon J, Ishii C, Suzuki K, Sakai W, Pratt R. 2004. Lessons from the genome sequence of Neurospora crassa : tracing the path from genomic blueprint to multicellular organism. Microbiol Mol Biol Rev. 68:1-108. [PDF]
Christensen, M. K.,Falkeid, G., Loros, J. J., Dunlap, J. C., Lillo, C., and Ruoff, P. 2004. A nitrate induced frq -less oscillator in Neurospora crassa. J. Biol. Rhythms 19:280-286.
Dunlap, J.C. and Loros, J.J. 2004. The Neurospora circadian system. J Biol Rhythms 19:414-424.
Dunlap, J.C. 2004. Kinases and Circadian Clocks. Dev Cell 6:160-161.
Dunlap, J.C. and Loros, J.J. 2005. Analysis of circadian rhythms in Neurospora - overview of assays and genetic and molecular biological manipulation. Methods Enzymology 393:3-22.
Dunlap, J.C. and Loros, J.J. 2005. Analysis of circadian rhythms in Neurospora: Overview of assays and genetic and molecular biological manipulation. Methods in Enzymology. 393(1):3-22.
Pregueiro, A. M., Price-Lloyd, N., Bell-Pedersen, D., Heintzen, C., Loros, J. J., Dunlap, J. C. 2005. Assignment of an essential role for the Neurospora frequency gene in circadian entrainment to temperature cycles. Proc. Nat. Acad. Sci. USA 102:2210 - 2215 (featured on the cover). [PDF]
Nowrousian M, Ringelberg C, Dunlap JC, Loros JJ, Kuck U. 2005. Cross-species microarray hybridization to identify developmenta lly regulated genes in the filamentous fungus Sordaria macrospora. Mol Genet Genomics 273:137 - 149. [PDF]
Elvin, M., Loros,, J. J., Dunlap, J. C., and Heintzen, C. 2005. The PAS/LOV protein VIVID supports a rapidly dampened daytime oscillator that facilitates entrainment of the Neurospora circadian clock. Genes & Dev 19:2593-2605. [PDF]
Froehlich, A.C., Noh, B., Vierstra, R., Loros J. J. and Dunlap, J. C. 2005. Genetic and molecular Analysis of Phytochromes from the filamentous fungus Neurospora crassa . Eukaryotic Cell 4:2140-2152. [LINK]
Colot, H. C., Loros, J. J. and Dunlap, J. C. 2005. Temperature-modulated alternative splicing and promoter use in the circadian clock gene frequency . Mol. Biol. Cell 16:5563-5571 (selected by the Editors for Incytes). [PDF]
Ruoff, P., Loros, J. J., and Dunlap, J. C. 2005. The Relationship Between FRQ-protein stability and Temperature Compensation in the Neurospora circadian Clock . Proc. Nat. Acad. Sci. USA 102:17681-17686. [PDF]
Duffield, G., Loros, J.J. and Dunlap, J.C. 2005. Analysis of circadian output rhythms of gene expression in Neurospora and mammalian cells in culture. Methods Enzymology 393:315-341.
Duffield, G. E., Watson, N. P., Mantani, A., Peirson, S. N., Loros, J. J., Israel, M. A. and Dunlap, J. C. 2006. A role for the Id2 gene in regulating photic entrainment of the mammalian circadian system; under review.
Colot, H.V., Park, G., Turner, G.E., Ringelberg, C., Crew, C.M., Litvinkova, L., Weiss, R.L., Borkovich, K.A. and Dunlap, J.C. 2006. A high-throughput gene knockout procedure for Neurospora reveals functions for multiple transcription factors. Proc Natl Acad Sci USA 103:10352-10357.
Dunlap, J.C. 2006. Running a clock requires quality time together. Science 311:184-186. [Summary, Full Text]
Dunlap, J.C. 2006. Proteins in the Neurospora circadian clockworks. J Biol Chem 281:28489-28493.
Dunlap, J.C. and Loros, J.J. 2006. How fungi keep time: circadian system in Neurospora and other fungi. Curr Opin Microbiol 9:579-586.
Belden, W.J., Loros, J.J. and Dunlap, J.C. 2006. CLOCK leaves its mark on histones. Trends Biochem Sci 31:610-613.
Pregueiro, A. M., Liu, Q., Loros, J. J., Dunlap, J. C. 2006. Clock Gene prd-4 is the Neurospora Checkpoint Kinase 2: a Regulatory Link between the Circadian and Cell Cycles. Science 313:644-649 (Research Article featured on the Cover). [Abstract, Full Text]
Belden, W., Loros, J. and Dunlap, J.C. 2007. Execution of the circadian negative feedback loop in Neurospora requires the ATP-dependent chromatin-remodeling enzyme CLOCKSWITCH. Molecular Cell 25:587-600.
Zoltowski, B.D., Schwerdtfeger, C., Widom J., Loros, J.J., Bilwes, A.M., Dunlap, J.C. and Crane, B.R. 2007. Conformational switching in the fungal light sensor Vivid. Science 316:1054-1057.
Belden, W.J., Larrondo, L.F., Froehlich, A.C., Shi, M., Chen, C.H., Loros, J.J. and Dunlap, J.C. 2007. The band mutation in Neurospora crassa is a dominant allele of ras-1 implicating RAS signaling in circadian output. Genes Dev 21:1494-1505.
Dunlap, J. C., Borkovich, K. A., Henn, M. A. , Turner, G. E., Sachs, M.S. , Glass, N. L., McCluskey, K., Plamann, M., Galagan, J. E., Birren, B. W.,Weiss, R. L., Townsend, J. E., Loros, J. J., Nelson, M. A., Lambreghts, R., Colot, H. V., Park. G., Collopy, P., Ringelberg, C., Crew, C., Litvinkova, L., DeCaprio, D., Hood, H. M., Curilla, S., Shi, M., Crawford, M., Koerhsen, M., Montgomery P., Larson, L., Pearson, M., Kasuga, T., Tian, T., Basturkmen, M., Altamirano, L., Xu, J. 2007. Enabling a community to dissect an organism - Overview of The Neurospora Functional Genomics Project. Adv Genetics 57:49-96.
Gooch, V., Mehra, A., Larrondo, L., Fox, J., Touroutoutoudis, M., Loros, J. and Dunlap, J.D. 2008. Fully Codon-optimized luciferase uncovers novel temperature characteristics of the Neurospora clock. Eukaryot Cell; in press.