Genomics and Proteomics Subject Guide

IV. Resources for Key Organisms in Research

Proteome BioKnowledge Library
The Proteome BioKnowledge Library includes several databases on Saccharomyces cerevisiae, Schizosaccaharomyces pombe, Caenorhabditis elegans, the human fungal pathogen database, MycoPathPD and the proteome survey database, HumanPSD for information on human, mouse, and rat proteins. Individual registration is required.

Resources for specific organisms:

Drosophila

Berkeley Drosophila Genome Project -
Drosophila informatics; GO database and software

Drosophila RNAi Screening Center -
Harvard Medical School

FlyBrain - an online atlas and database of the Drosophila nervous system

Slime Mold

DictyBase - informatics resource for the slime mold Dictyostelium discoideum

E. coli

EcoCyc - a scientific database for the bacterium Escherichia coli

Mouse

Edinburgh Mouse Atlas Project (EMAP)

Mouse and Rat Research Home Page

Mouse Genome Informatics (MGI)

Whole Mouse Catalog

Yeast

Yeast Proteome Database - part of the BioKnowledge Library

GeneDB S. pombe - database for the fission yeast Schizosaccharomyces pombe

Saccharomyces Genome Database (SGD) - database for the budding yeast Saccharomyces cerevisiae

C. Elegans

Wormbase - the biology and genome of Caenorhabditis elegans

Zebra Fish

Zebra Fish Information Network (ZFIN) - a zebrafish model organism database

Plants

SoyBase - a soybean genetic database, contains reaction and pathway descriptions and diagrams for a number of basic metabolic pathways

The Arabidopsis Information Resource (TAIR) - a database for the brassica family plant Arabidopsis thaliana