Review Papers

• Bin Chen, Brian W. Pogue, P. Jack Hoopes, Tayyaba Hasan, “ Vascular and Cellular Targeting for Photodynamic Therapy” Critical Reviews in Eukaryotic Gene Expression 16(4), 279-306 (2006).
• Pogue, B. W., “Near-Infrared Characterization of Disease via Vascular Permeability Probes” Academic Radiology, Invited Editorial, 13(1) 1-3, (2006).
• Bin Chen, Brian W. Pogue, Tayyaba Hasan, “ Liposomal Delivery of Photosensitizing Agents” Expert Opinions in Drug Delivery, 2(3) 477-487 (2005).
• Srinivasan, S., Pogue, B. W., Brooksby, B., Jiang, S., Dehghani, H., Kogel, C., Wells, W. A., Jiang, S., Poplack, S. P., Paulsen, K. D., “Near-Infrared Characterization of Breast Tumors In Vivo using Spectrally constrained reconstruction” Technology in Cancer Research and Treatment, 4(5) 513-526 (2005).
• Pogue,B. W., Hasan, T. “Targeting in Photodynamic Therapy and Photo-Imaging” Optics and Photonics News 14(8), 36-43 (August, 2003)
• Hasan, T., Ortel, B., Moor, A. C. E., Pogue, B.W. “Photodynamic Therapy Of Cancer” Chapter 40 in Holland Frei Cancer Medicine 6, BC Dekker Inc, Hamiton Canada, 2003.

2006 Papers

• Bartek, M. Wang, X., Wells, W. A., Paulsen, K. D., Pogue, B. W., “Estimation of Sub-Cellular Particle Size Histograms with Electron Microscopy for Prediction of Optical Scattering in Breast Tissue” J. Biomed. Optics, 11(6) 064007 (2006).
• Piao, D., Xie, H., Zhang, W., Krasinski, J. S., Zhang, G., Dehghani, H., Pogue, B. W., “Endoscopic, rapid near infrared optical tomography” Optics Letters 31(19) 2876-2878 (2006).
• Wang, X., Pogue, B. W., Jiang, S., Dehghani, H., Song, X., Srinivasan, S., Brooksby, B. A., Paulsen, K. D., Kogel, C., Poplack, S. P., Wells, W. A., “Image Reconstruction of Effective Mie Scattering Parameters of Breast Tissue In Vivo with Near-Infrared Tomography” Journal of Biomedical Optics, 11, 041106 (2006).
• Srinivasan, S., Pogue, B. W., Dehghani, H., Leblond, F., Intes, X., “A Data Subset Algorithm for Computationally Efficient Reconstruction of 3-D Spectral Imaging in Diffuse Optical Tomography” Optics Express 14(12) 5394-5410 (2006).
• Gibbs, S. L., Chen, B., O’Hara, J. A., Hoopes, P. J., Hasan, T., Pogue, B. W., “Protoporphyrin IX Level Correlates with Number of Mitochondria, but Increases in Production Correlate with Tumor Cell Size” Photochemistry and Photobiology, 82 1334-1341 (2006).
• Zhou, X., Chen, C., Hoopes, P. J., Hasan, T., Pogue, B. W. “Tumor vascular area correlates with photosensitizer uptake: Analysis of verteporfin microvascular delivery in the Dunning rat prostate tumor” Photochemistry and Photobiology, 82 1347-1357 (2006).
• Pogue, B. W., Patterson, M. S., “Review of Tissue Simulating Phantoms for Optical Spectroscopy, Imaging and Dosimetry” Journal of Biomedical Optics, 11, 041102, (2006).
• Pogue, B. W., Davis, S. C., Song, X., Brooksby, B. A., Dehghani, H., Paulsen, K. D., “Image Analysis Methods for Diffuse Optical Tomography” Journal of Biomedical Optics, 11, May/June Issue 033001 (2006).
• Yalavarthy. P. K., Dehghani, H.., Pogue, B. W., Paulsen, K. D., “Critical computational aspects of near infrared circular tomographic imaging: Analysis of measurement number, mesh resolution and reconstruction basis” Optics Express 14(13) 6114-6127 (2006).
• Chen, B., Pogue, B. W., Luna, J. M., Hardman, R. L., Hoopes, P. J., Hasan, T., “Tumor vascular permeabolization by vascular targeting photosensitization: effects, mechanism and therapeutic implications” Clinical Cancer Research, 12(3) 917-923 (2006).
• Brooksby, B., Pogue, B. W., Jiang, S., Dehghani, H., Srinivasan, S., Kogel, C., Tosteson, T. D., Weaver, J., Poplack, S. P., Paulsen, K. D., “Imaging Breast Adipose and Fibroglandular Tissue Molecular Signatures using Hybrid MRI-Guided Near-Infrared Spectral Tomography” Proceedings of the National Academy of Sciences, 103(23) 8828-8833 (2006).
• Chen, B., Pogue, B. W., Luna, J. M., Hardman, R. L., Hoopes, P. J., Hasan, T., “Tumor vascular permeabolization by vascular targeting photosensitization: effects, mechanism and therapeutic implications” Clinical Cancer Research, 12(3) 917-923 (2006).
• Zhou, X., Pogue, B. W., Chen, B., Demidenko, E., Joshi, H., Hoopes, P. J., Hasan, T., “Pretreatment photosensitizer dosimetry reduces variation in treatment response” International Journal of Radiation Oncology Biology Physics, 64(4) 1211-1220 (2006).
• Dehghani, H., Davis, S., Jiang, S., Pogue, B. W., Paulsen, K. D., "Spectrally-resolved bioluminescence optical tomography" Optics Letters 31(3) 365-367 (2006).
• Srinivasan, S., Pogue, B. W., Jiang, S., Dehghani, H., Kogel, C., Soho, S., Gibson, J. J., Tosteson, T. D., Poplack, S. P., Paulsen, K. D., “Interpreting Hemoglobin and Water Concentration, Oxygen Saturation, and Scattering Measured In-Vivo with Direct Spectral Reconstruction in Near-Infrared Breast Tomography” Academic Radiology, 13: 195-202 (2006).
• Pogue, B. W., “Near-Infrared Characterization of Disease via Vascular Permeability Probes” Academic Radiology, Invited Editorial, 13(1) 1-3, (2006).

• Piao, D., Jiang, S., Srinivasan, S., Pogue, B. W., “Instrumentation for video-rate near-infrared diffuse optical tomography” Review of Scientific Instruments, 76, 124301 (2005).
• del Carmen, M. G., Rizvi, I., Moor, A. C. E., Oliva, E., Chang, Y., Pogue, B., Hasan, T. “Epidermal Growth Factor Receptor Targeted Immunotherapy is Synergistic with Photodynamic Treatment of Ovarian Cancer In Vivo”, Journal of the National Cancer Institute, 97(20) 1516-1524 (2005).
• Davis, S. C., Pogue, B. W., Dehghani, H., Paulsen, K. D., “Contrast-Detail Analysis of Diffuse Optical Fluorescence Tomography Reconstruction” Journal of Biomedical Optics, 10(5) 050501 1-3 (2005).
• Srinivasan, S., Pogue, B. W., Brooksby, B., Jiang, S., Dehghani, H., Kogel, C., Wells, W. A., Jiang, S., Poplack, S. P., Paulsen, K. D., “Near-Infrared Characterization of Breast Tumors In Vivo using Spectrally constrained reconstruction” Technology in Cancer Research and Treatment, 4(5) 513-526 (2005).
• Piao, D., Jiang, S., Srinivasan, S., Dehghani, H., Pogue, B. W., “Video-rate near-infrared optical tomography using spectrally-encoded parallel light delivery” Optics Letters, 30(19) 2593-2595 (2005).
• Xu, H., Pogue, B. W., Springett, R., Dehghani, H., “Spectral Derivative Based Image Reconstruction Provides Inherent Insensitivity to Coupling and Geometric Errors” Optics Letters, 29(17) 2043-2045 (2005).
• Pogue, B. W., Chen, B., Zhou, X., Hoopes, P. J., “Analysis of Sampling Volume and Tissue Heterogeneity upon the In Vivo Detection of Fluorescence” Journal of Biomedical Optics, 10(4) (2005).
• Brooksby, B., Jiang, S., Dehghani, H., Pogue, B. W., Paulsen, K. D., Weaver, J., Kogel C., Poplack, S. P. “Combining near infrared tomography and magnetic resonance imaging to study in vivo breast tissue: implementation of a Laplacian-type regularization to incorporate MR structure” Journal of Biomedical Optics, 10(5) 051504 1-10 (2005).
• Brooksby, B., Srinivasan S, Jiang S, Dehghani H, Pogue BW, Paulsen KD, “Spectral-priors information improves Near-Infrared diffuse tomography more than spatial-prior”, Optics Letters, 30(15) 1968-1970, (2005).
• Wang, X., Pogue, B. W., Brian W. Pogue, Shudong Jiang, Xiaomei Song, Keith D. Paulsen, Christine Kogel, Steven P. Poplack, Wendy A. Wells “Approximation of Mie Scattering Parameters in Near-Infrared Tomography of Normal Breast Tissue In Vivo” Journal of Biomedical Optics, 10(5) 10(5) 051704 1-8 (2005).
• Savellano, M., Pogue, B. W., Hoopes, P. J., Vitetta, E. S., Paulsen, K. D., “Multi-epitope HER2 Targeting enhances photoimmunotherapy of HER2-overexpressing cancer cells with pyrophrophorbide-a immunoconjugates” Cancer Research, 65: 6371-6379 (2005).
• Bin Chen, Brian W. Pogue, Tayyaba Hasan, “ Liposomal Delivery of Photosensitizing Agents” Expert Opinions in Drug Delivery, 2(3) 477-487 (2005).
• Dehghani, H., Brooksby, B. A., Pogue B. W., Paulsen K. D., "Effects of Refractive Index on Near Infrared Tomography of the Breast” Applied Optics, 44(18) 1870-1878 (2005).
• Srinivasan, S., Pogue, B. W., Jiang, S., Dehghani, H., Paulsen, K. D., “Spectrally Constrained Chromophore and Scattering NIR Tomography Improves Quantification and Robustness of Reconstruction” Applied Optics, 44(10) 1858-1869 (2005).
• Xu, H., Springett, R., Dehghani, H., Pogue, B. W., Paulsen, K. D., Dunn, J. F., "Magnetic-resonance-imaging-coupled broadband near-infrared tomography system for small animal brain studies” Applied Optics, 44(11) 2177-2188 , (2005).
• Chen, B., Pogue, B. W., Zhou, X., O’Hara, J. A., Solban, N., Demidenko, E., Hoopes, P. J., Hasan, T., “Effect of Tumor Host Microenvironment on Photodynamic Therapy in a Rat Prostate Tumor Model” Clin. Cancer Researh 11, 720-727 (2005).
• Chen, B., Pogue, B. W., Hoopes, P. J., Hasan, T. “Combining vascular and cellular targeting regimens enhances the therapeutic effect of photodynamic therapy” International Journal of Radiation Oncology, Biology, Physics, 61(4) 1216-1226 (2005).

2004

• Srinivasan, S., Pogue, B. W., Dehghani, H., Jiang, S., Song, X., Paulsen, K. D., “Improved Quantification of Small Objects in Near-Infrared Diffuse Optical Tomography” Journal of Biomedical Optics, 9(6) 1161-1171 (2004).
• Pogue, B. W., S. Jiang, H. Dehghani, C. Kogel, S. Soho, S. Srinivasan, X. Song, T. D. Tosteson, S. P. Poplack, K. D. Paulsen “Characterization of Hemoglobin, Water and NIR Scattering in Breast Tissue: Analysis of inter-subject variability and menstrual cycle changes” Journal of Biomedical Optics, 9(3) 541-552 (2004).
• Zhou, X., Pogue, B. W., Chen, B., Hasan, T., “Analysis of Effective Molecular Diffusion Rates for Benzoporphyrin Derivative in Subcutaneous versus Orthotopic Dunning Prostate Tumors” Photochemistry and Photobiology, 79(4) 323-331 (2004).
• Poplack, Steven P., Keith D. Paulsen, Alexander Hartov, A. , Meaney, P. M., Pogue, B. W., Tosteson, T. D., Grove, M. R., Soho, S. K., Wells, W. A., “Electromagnetic Breast Imaging: Average Tissue Property Values in Women with Negative Clinical Findings” Radiology 231(2) 571-580 (2004).
• Dehghani, M., Doyley, M., Pogue, B. W., Jiang, S., Geng J., Paulsen, K. D. “Breast Deformation Modeling for Image Reconstruction in Near Infrared Optical Tomography” Physics in Medicine and Biology, 49(7), 1131-1146(2004).
• Pogue, B. W., Gibbs, S. L., Chen, B., Savellano, M. “Fluorescence Imaging In Vivo: Raster Scanned Point-Source Imaging Provides More Accurate Quantification than Broad Beam Geometries” Technology in Cancer Research and Treatment 3(1) 15-21 (2004).
• Song, X., Pogue, B. W,. Jiang, S., Dehghani, H., Doyley, M. M., Tosteson, T. D., Poplack, S. P., Paulsen “Automated Region Detection Based Upon Contrast To Noise Ratio In Near-Infrared Breast Imaging” Applied Optics, 43(5), 1053-1062 (2004).
• Sheng, Chao, Pogue, B. W., Wang, E., Hutchins, J. E., and P. Jack Hoopes, “Assessment of Photosensitizer Dosimetry and Tissue Damage Assay for Photodynamic Therapy in Advanced-stage Tumors” Photochemistry and Photobiology 79(6), 520–525 (2004).
• Song, X., Pogue, B. W,. Jiang, S., Dehghani, H., Doyley, M. M., Tosteson, T. D., Poplack, S. P., Paulsen “Automated Region Detection In Near-Infrared Breast Imaging Based Upon Contrast To Noise Ratio” Applied Optics, 43(5) 1053-1062 (2004).

2003

• Pogue,B. W., Hasan, T. “Targeting in Photodynamic Therapy and Photo-Imaging” Optics and Photonics News 14(8), 36-43 (August, 2003)
• Hasan, T., Ortel, B., Moor, A. C. E., Pogue, B.W. “Photodynamic Therapy Of Cancer” Chapter 40 in Holland Frei Cancer Medicine, BC Dekker Inc.,2003.
• Dehghani, H., Brooksby, B., Vishwanath, K., Pogue, B. W., Paulsen, K. D., “The effects of internal refractive index variation in near-infrared optical tomography: the finite element modeling approach” Physics in Medicine and Biology, 48, 2713-2727 (2003).
• Srinivasan, S., Pogue, B. W., Jiang, S., Dehghani, H., Kogel, C., Soho, S., Gibson, J. J., Tosteson, T. D., Poplack, S. P., Paulsen, K. D., “Interpreting Hemoglobin and Water Concentration, Oxygen Saturation, and Scattering Measured by Near-Infrared Tomography of Normal Breast In Vivo” Proceedings of the National Academy of Sciences, 100(21) 12349-12354 (2003).
• Brooksby, B., Dehghani, H., Pogue B. W., Paulsen, K. D. “Near infrared (NIR) tomography breast image reconstruction with a priori structural information from MRI: algorithm development for reconstructing heterogeneities” IEEE Journal of Selected Topics in Quantum Electronics, 9(2) 199-209 (2003). (Special issue on Lasers In Biology and Medicine).
• Jiang, S., Pogue, B. W., Kogel, C. Poplack, S. P., Paulsen, K. D. “Near-Infrared Spectral Detection In Vivo of Pressure-Induced Changes in Breast Tissue” Optics Letters 28(14), 1212-1214 (2003).
• Chen, B., Pogue, B. W., Goodwin, I. A., O’Hara, J. A., Wilmot, C. M., Hutchins, J. E., Hoopes, P. J., Hasan, T., “Blood Flow Dynamics Following Photodynamic Therapy With Verteporfin in the RIF-1 Tumor” Radiation Research, 160, 452-459, (2003).
• Li, D., Meaney, P. M., Tosteson, T. D., Jiang, S., Kerner, T., McBrice, T. O., Pogue, B. W., Hartov, A., Paulsen, K., “Comparisons of three alternative breast modalities in a common phantom imaging experiment” Medical Physics 30(8) 2194-2205 (2003).
• Pogue, B. W., O'Hara, J. A., E. Demidenko, C. J. Wilmot, I. A. Goodwin, B. Chen, H. M. Swartz, T. Hasan “Non-Vascular Targeting Photodynamic Therapy of the RIF-1 Tumor with Verteporfin Causes Enhanced Radiation Sensitivity” Cancer Research, 63, pp1025-1033 March 1 (2003).
• Lee, C. C., Pogue, B. W., O’Hara, J. A., Wilmot, C. M., Strawbridge, R. R., Burke, G. C., Hoopes, P. J., “Spatial heterogeneity and temporal kinetics of photosensitizer (AlPcS2) concentration in murine tumors RIF-1 and MTG-B” Photochemical and Photobiological Sciences, 2, 145-150 (2003).
• Jiang, S., Pogue, B. W., McBride, T. O., Paulsen, K. D., “Quantitative Analysis of Near-Infrared Tomography: Insensitivity to the Tissue-Simulating Pre-Calibration Phantom” Journal of Biomedical Optics, 8(2) 308-315 (2003).
• Dehghani, H, Pogue, B. W., Jiang, S., Brooksby, B., Paulsen, K. D., “Three-dimensional optical tomography: resolution in small-object imaging” Applied Optics 42(16) 3117-3128 (2003).
• Dehghani, H., Pogue, B. W., Poplack, S.P., Paulsen, K. D., “Multiwavelength three-dimensional near-infrared tomography of the breast: initial simulation, phantom, and clinical results”, Applied Optics, 42(1) 135-145, 2003.
• Xu, H., Dehghani, H., Pogue, B. W., Springett, R., Paulsen, K. D., Dunn, J. F., “Near Infrared imaging in the small animal brain: Optimizing the optical fiber positions” Journal of Biomedical Optics, 8(1), 102-110, 2003.

2002

• Vishwanath, K., Pogue, B. W., Mycek, M. A., “Quantitative Fluorescence Lifetime Spectroscopy in Turbid Media: Comparison of Theoretical, Experimental and Computational Methods” Physics in Medicine and Biology 47, 3387-3405 (2002).
• Pogue, B. W., Song, X., Tosteson, T. D., McBride, T. O., Jiang, S., Paulsen, K. D. “Statistical Analysis of Non-linearly Reconstructed Near-Infrared Tomographic Images: Part I - Theory and Simulations” IEEE Med. Imaging, 21(7), 755-763, 2002.
• Song, X., Pogue, B. W., Tosteson, T. D., McBride, T. O., Jiang, S., Paulsen, K. D. “Statistical Analysis of Non-linearly Reconstructed Near-Infrared Tomographic Images: Part II – Experimental Interpretation” IEEE Med. Imaging, 21(7), 764-772, 2002.
• McBride, T. O., Pogue, B. W., Jiang, S., Österberg, U. L., Paulsen, K. D., Poplack, S. P., “Multi-spectral near-infrared tomography: a case study in compensating for water and lipid content in hemoglobin imaging of the breast”, Journal of Biomedical Optics 7(1) 72-79, 2002.
• Pogue, B. W., O'Hara, J. A., Goodwin, I. A., Fournier, G. P.,Wilmot, C. J., Akay, A. R. and Swartz, H. M., "Tumor pO2 Changes during Photodynamic Therapy Depend upon Photosensitizer Type and Time After Injection." Comparative Biochemistry and Physiology Part A 132 177–184 (2002).

2001

• Pogue, B. W., McBride, T. O., Osterman, S., Poplack, S., Osterberg, U. And Paulsen, K. D. Quantitative Hemoglobin Tomography with Diffuse Near-Infrared Spectroscopy: Pilot Results in the Breast., Radiology, 218(1) 261-6, Jan. 2001.
• Pogue, B. W., Pitts, J. D., Mycek, M-A., Sloboda, R. D., Wilmot, C. M., Brandsema, J. F., O'Hara, J. A., “In Vivo NADH Fluorescence Monitoring as an Assay for Cellular Damage in Photodynamic Therapy” Photochemistry and Photobiology, 74(6), 817-824, 2001.
• Pogue, B. W., Braun, R., Lanzen, J., Erickson, C., Dewhirst M. W., “Acute Tissue (pO2) and Blood Flow Dynamics during Photodynamic Therapy with Verteporfin.” Photochemistry and Photobiology, 74(5), 2001.
• Pogue, B. W., Kaufman, H. B., Zelenchuk, A., Harper, W., Burke, G. C., Burke, E. E., Harper, D. M., “Analysis of acetic acid-induced whitening of high-grade squamous intraepithelial lesions” Journal of Biomedical Optics, 6(4), 397-401, 2001.
• Lee , C. C., Pogue, B. W., Burke, G. C., Hoopes, P. J., “Comparison of photosensitizer (AlS2Pc) quantitation techniques : In situ fluorescence microsampling versus tissue chemical extraction”, Photochemistry and Photobiology, 74(3), 453-460, Sept. 2001.
• Pogue, B. W., White, E., Osterberg, U. L., Paulsen, K. D., “Absorbance of opaque microstructure in optically diffuse media”, Applied Optics 40(25) 4616-4621, September 1, 2001.
• McBride, T. O., Pogue, B. W., Jiang, S., Österberg, U. L., Paulsen, K. D., Poplack, S. P., “Initial studies of in vivo absorbing and scattering heterogeneity in near-infrared tomographic breast imaging” Optics Letters, 26(11), 822-824, (2001).
• Meaney, P. M., Paulsen, K. D., Pogue, B. W., Miga, M. I., Microwave Imaging utilizing phase unwrapping to reduce recovered object ambiguity, IEEE transactions on Medical Imaging, 20(2) 104-116, 2001.
• McBride, T. O., Pogue, B. W., Jiang, S. Österberg, U. L., Paulsen K. D., “Development and Calibration of a Parallel Modulated Near-Infrared Tomography System for Hemoglobin Imaging In Vivo” Review of Scientific Instruments 72(3) 1817-24, March 2001.
• Pogue, B. W., Ortel, B., Chen, N., Redmond R. W., Hasan, T, “Photobiological and photophysical study of the phototoxicity of two chlorins”, Cancer Research 61, 717-724, Jan. 29, 2001.
• Pogue, B. W., Geimer, S., McBride, T. O., Jiang, S., Österberg, U. L., Paulsen, K. D., “3-D Simulation of Near-Infrared Diffusion in Tissue: Boundary Conditions and Geometry Analysis For a Finite Element Reconstruction Algorithm” Applied Optics, 40(4), 588-600, Feb. 2001.
• Pogue, B. W., O’Hara, J. A., Wilmot, C. M., Paulsen, K. D., Swartz, H. M., “Estimation of capillary oxygen concentration in RIF-1 tumors through model-based interpretation of hypoxia and Eppendorf measurements”, Radiation Research 155(1 part 1), 15-25, 2001.

2000

• Pogue, B. W., Biomedical Photo-chemistry and Photo-imaging In Vivo, IEEE Lasers and Electro-optics Society newsletter, 14(2), pp3-7, April 2000, ( http://www.ieee.org/organizations/pubs/newsletters/leos/apr00/biomed.htm).
• Pogue, B. W., Willscher, C., McBride, T. O., Osterberg, U. L., Paulsen, K. D., Contrast-detail analysis for detection and characterization with near-infrared diffuse tomography., Medical Physics, 27(12), 2693-2700 (2000).
• Pogue, B. W., Paulsen, K. D., Kaufman, H., Abele, C., Calibration of near infrared frequency-domain tissue spectroscopy for absolute absorption coefficient quantitation in neonatal head-simulating phantoms, Journal of Biomedical Optics, 5(2), 185-193 (2000).
• Pogue, B. W., Mycek, M. A., Harper, D., Image analysis for discrimination of cervical neoplasia in colposcopy., Journal of Biomedical Optics 5(1), 72-82 (2000).

1999

• Tosteson, T. D., Pogue, B. W., Demidenko, E., McBride, T. O., Paulsen, K. D. Confidence maps and confidence intervals for near-infrared images in breast cancer. IEEE Transactions on Medical Imaging, 18(12), 1188-93 (1999).
• McBride, T. O., Pogue, B. W., Poplack, S. B., Gerety, E. D., Osterberg, U. L., Pauslen, K. D., Spectroscopic diffuse optical tomography for quantitatively assessing hemoglobin concentration and oxygenation in breast tissue. Applied Optics 38(25), pp5480-90, 1999.
• Pogue, B. W., McBride, T. O., Prewit, J., Osterberg, U. L., Paulsen, K. D., Spatially variant regularization improves diffuse optical tomography. Applied Optics, 38 (13) pp2950-2961, 1999.
• Pogue B. W., Momma T., Wu H., Hasan T. Transient absorption in vivo during photodynamic therapy with pulsed laser light. British Journal of Cancer, 80(3-4) pp.344-351, 1999.
• Pogue BW, McBride T. O., Osterberg U. L. and Paulsen K. D. Comparison of imaging geometries for diffuse optical tomography of tissue. Opt Express 4(8), 270-286, 1999.
• Testorf, M., Osterberg, U. L., Pogue, B. W., Paulsen, K. D., Sampling of time and frequency domain signals in Monte Carlo simulations of photon migration. Applied Optics, 38(1), 236-245, 1999.

1998

• Pogue, B. W., Redmond R. W., Trivedi, N, Hasan, T. Photophysical Properties of Tin Ethyl Etiopurpurin I (SnET2) and Tin Octaethylbenzochlorin (SnOEBC) in solution and bound to albumin. Photochemistry & Photobiology 68(6), 809-15, (1998).
• Pogue, B. W. and K. D. Paulsen, High resolution near infrared tomographic imaging simulations of rat cranium using apriori MRI structural information. Optics Letters 23(21), 1716-8, (1998).
• Pogue, B. W. and Gregory Burke, Fiber optic bundle design for non-invasive quantitative fluorescence measurements from tissue-simulating media. Applied Optics, 37(31) 7429-7436 (1998).

1997

• Pogue, B. W., Testorf, M., McBride, T., Osterberg,U., Paulsen, K. Instrumentation and design of a frequency-domain diffuse optical tomography imager for breast cancer screening. Optics Express, 1(13), 394-403 (1997).
• Pogue B W, Lilge L, Patterson M S, Wilson B C, Hasan T The absorbed photodynamic dose examined from pulsed and cw laser light using tissue simulating dosimeters. Applied Optics, 36, 7257-7269, 1997.
• Pogue B W, Hasan T Fluorophore quantitation in scattering biologic media by confocal detection. IEEE J. Quant. Electr.,2(4), 959-964, 1997.
• Paithankar D Y, Chen A U, Pogue B W, Patterson M S, Sevick-Muraca E M 1996 Imaging of fluorescent yield and lifetime from multiply scattered light re-emitted from tissues and other random media. Applied Optics 36, 2260-2272, 1997.
• Pogue B W, Hasan T A theoretical examination of light fractionation and dose rate effects in photodynamic therapy. Radiation Research, 147, 551-559,1997.

1996

• Pogue B W, Patterson M S, Assessment of a wavelength tunable frequency-domain system for non-invasive tissue spectroscopy. Journal of Biomedical Optics , 1 (3), 311-323, 1996.
• Jiang H, Paulsen K D, Osterberg U L, Pogue B W, Patterson M S Optical image reconstruction using frequency-domain data: Simulations and Experiments. Journal of the Optical Society of America A: Optics and Image Science 13, 253-266, 1996.

1995

• Jiang H, Paulsen K D, Osterberg U L, Pogue B W, Patterson M S Simultaneous reconstruction of optical absorption and scattering maps in turbid media from near-infrared frequency-domain data Optics Letters 20, 2128-2130, 1995.
• Pogue B W, Patterson M S, Jiang H, Paulsen K D Initial assessment of a simple system for frequency-domain diffuse optical tomography. Physics in Medicine and Biology 40, 1709-1729, 1995.

1994

• Pogue B W, Patterson M S Frequency-domain optical absorption spectroscopy of finite tissue volumes using diffusion theory. Physics in Medicine and Biology 39, 1157-1180, 1994.
• Patterson M S, Pogue B W Mathematical model for time-resolved and frequency-domain fluorescence spectroscopy in biological tissues. Applied Optics 33, 1963-1974, 1994.
• Alonso E, O’Neill JA, Pateopol L, Pogue B, Vibrationally excited-state absorption of CF3D using 2-frequency infrared multiphoton absorption, , Journal of Physics B-Atomic Molecular and Optical Physics 27: (5) 913-924 (1994).

1992

• O’Neill J A, Pateopol L, Pogue B Multiphoton absorption measurments in CF3H. Journal of Physics B: Atomic, Moelcular and Optical Physics 25, 3335-3344, 1992.